CAI_calculator

Attributes

config
def_refs

Classes

CAICalculator

Functions

load_config(path)

Module Contents

class CAI_calculator.CAICalculator(target_rna, reference_seqs=None, ref_file=None)

Parameters:

• target_rna (str)

• reference_seqs (Optional[list[str]])

• ref_file (Optional[str])

_load_reference_sequences_from_file(filepath)

Parameters:

filepath (str)

Return type:

list[str]

compute_cai()

Return type:

float

target_dna

target_rna

CAI_calculator.config

CAI_calculator.def_refs

CAI_calculator.load_config(path)

Parameters:

path (str)